PublicationsPublications 2022

Department of Translational and Applied Genomics (TAG)

Our Publications - 2022

Mammographic Density Decline, Tamoxifen Response, and Prognosis by Molecular Characteristics of Estrogen Receptor-Positive Breast Cancer

Abubakar M, Mullooly M, Nyante S, Pfeiffer RM, Aiello Bowles EJ, Cora R, Bodelon C, Butler E, Butcher D, Sternberg L, Troester MA, Weinmann S, Sherman M, Glass AG, de Gonzalez AB, Gierach GL.  JNCI Cancer Spectr. 2022 May 02;6(3).  PMID: 35583138  PMCID: PMC9070642

Laboratory-related outcomes from integrating an accessible delivery model for hereditary cancer risk assessment and genetic testing in populations with barriers to access

Amendola LM, Shuster E, Leo MC, Dorschner MO, Rolf BA, Shirts BH, Gilmore MJ, Okuyama S, Zepp JM, Kauffman TL, Mittendorf KF, Bellcross C, Jenkins CL, Joseph G, Riddle L, Syngal S, Ukaegbu C, Goddard KAB, Wilfond BS, Jarvik GP, CHARM Study.  Genet Med. 2022 06;24(6):1196-1205. Epub 2022-03-16.  PMID: 35305866 

Identifying patients with Lynch syndrome using a universal tumor screening program in an integrated healthcare system

Crain PR, Zepp JM, Gille S, Jenkins L, Kauffman TL, Shuster E, Goddard KAB, Wilfond BS, Hunter JEHered Cancer Clin Pract. 2022 Apr 18;20(1):17. Epub 2022-04-18.  PMID: 35436948  PMCID: PMC9014602

Motivations and concerns of patients considering participation in an implementation study of a hereditary cancer risk assessment program in diverse primary care settings

Duenas DM, Shipman KJ, Porter KM, Shuster E, Guerra C, Reyes A, Kauffman TL, Hunter JE, Goddard KAB, Wilfond BS, Kraft SA.  Genet Med. 2022 03;24(3):610-621. Epub 2021-11-23.  PMID: 34906471  PMCID: PMC8939763

The Kaiser Permanente Research Bank Cancer Cohort: a collaborative resource to improve cancer care and survivorship

Feigelson HS, Clarke CL, Van Den Eeden SK, Weinmann S, Burnett-Hartman AN, Rowell S, Scott SG, White LL, Ter-Minassian M, Honda SAA, Young DR, Kamineni A, Chinn T, Lituev A, Bauck A, McGlynn EA.  BMC Cancer. 2022 Feb 25;22(1):209. Epub 2022-02-25.  PMID: 35216576  PMCID: PMC8876075

Developing an algorithm across integrated healthcare systems to identify a history of cancer using electronic medical records

Gander JC, Maiyani M, White LL, Sterrett AT, Güney B, Pawloski PA, DeFor T, Olsen Y, Rybicki BA, Neslund-Dudas C, Sheth D, Krajenta R, Purushothaman D, Honda S, Yonehara C, Goddard KAB, Prado YK, Ahsan H, Kibriya MG, Aschebrook-Kilfoy B, Chan CH, Hague S, Clarke CL, Thompson B, Sawyer J, Gaudet MM, Feigelson HS.  J Am Med Inform Assoc. 2022 06 14;29(7):1217-1224.  PMID: 35348718  PMCID: PMC9196704

Establishing the Medical Actionability of Genomic Variants

Goddard KAB, Lee K, Buchanan AH, Powell BC, Hunter JEAnnu Rev Genomics Hum Genet. 2022 08 31;23:173-192. Epub 2022-04-01.  PMID: 35363504  PMCID: PMC10184682

Mammary collagen is under reproductive control with implications for breast cancer

Guo Q, Sun D, Barrett AS, Jindal S, Pennock ND, Conklin MW, Xia Z, Mitchell E, Samatham R, Mirza N, Jacques S, Weinmann S, Borges VF, Hansen KC, Schedin PJ.  Matrix Biol. 2022 01;105:104-126. Epub 2021-11-25.  PMID: 34839002 

ClinGen's Pediatric Actionability Working Group: Clinical actionability of secondary findings from genome-scale sequencing in children and adolescents

Hunter JE, Jenkins CL, Bulkley JE, Gilmore MJ, Lee K, Pak CM, Wallace KE, Buchanan AH, Foreman AKM, Freed AS, Goehringer S, Manickam K, Meeks NJL, Ramos EM, Shah N, Steiner RD, Subramanian SL, Trotter T, Webber EM, Williams MS, Goddard KAB, Powell BC, ClinGen.  Genet Med. 2022 06;24(6):1328-1335. Epub 2022-03-25.  PMID: 35341655  PMCID: PMC9156571

Should Health Systems Share Genetic Findings With At-Risk Relatives When the Proband Is Deceased? Interviews With Individuals Diagnosed With Lynch Syndrome

Hunter JE, Schneider JL, Firemark AJ, Davis JV, Gille S, Pawloski PA, Liang SY, Schlieder V, Rahm AK.  J Patient Cent Res Rev. 2022 Fall;9(4):282-289. Epub 2022-10-18.  PMID: 36340570  PMCID: PMC9584081

An accessible, relational, inclusive, and actionable (ARIA) model of genetic counseling compared with usual care: Results of a randomized controlled trial

Joseph G, Leo MC, Riddle L, Guerra C, Amendola LM, Gilmore MJ, Rolf BA, Dorschner MO, Zepp J, Biesecker BB, Caruncho M, Hunter JE, Keast E, Lewis HS, Duenas D, Kauffman T, Bulkley JE, Anderson KP, Jarvik GP, Goddard KAB, Wilfond BS, CHARM Study Team.  Genet Med. 2022 Nov;24(11):2228-2239. Epub 2022-09-02.  PMID: 36053287 

Risk-reducing surgery in unaffected individuals receiving cancer genetic testing in an integrated health care system

Knerr S, Guo B, Mittendorf KF, Feigelson HS, Gilmore MJ, Jarvik GP, Kauffman TL, Keast E, Lynch FL, Muessig KR, Okuyama S, Veenstra DL, Zepp JM, Goddard KAB, Devine B.  Cancer. 2022 08 15;128(16):3090-3098. Epub 2022-06-09.  PMID: 35679147  PMCID: PMC9308746

Quantifying cancer risk from exposures to medical imaging in the Risk of Pediatric and Adolescent Cancer Associated with Medical Imaging (RIC) Study: research methods and cohort profile

Kwan ML, Miglioretti DL, Bowles EJA, Weinmann S, Greenlee RT, Stout NK, Rahm AK, Alber SA, Pequeno P, Moy LM, Stewart C, Fong C, Jenkins CL, Kohnhorst D, Luce C, Mor JM, Munneke JR, Prado Y, Buth G, Cheng SY, Deosaransingh KA, Francisco M, Lakoma M, Martinez YT, Theis MK, Marlow EC, Kushi LH, Duncan JR, Bolch WE, Pole JD, Smith-Bindman R.  Cancer Causes Control. 2022 May;33(5):711-726. Epub 2022-02-02.  PMID: 35107724  PMCID: PMC9596345

ORCA, a values-based decision aid for selecting additional findings from genomic sequencing in adults: Efficacy results from a randomized trial

Liles EG, Leo MC, Freed AS, Porter KM, Zepp JM, Kauffman TL, Keast E, McMullen CK, Gruß I, Biesecker BB, Muessig KR, Eubanks DJ, Amendola LM, Dorschner MO, Rolf BA, Jarvik GP, Goddard KAB, Wilfond BS.  Genet Med. 2022 Aug;24(8):1664-1674. Epub 2022-05-06.  PMID: 35522237  PMCID: PMC9586129

An Examination of the Ethical and Legal Limits in Implementing "Traceback Testing" for Deceased Patients

Martucci J, Prado Y, Rope AF, Weinmann S, White L, Zepp J, Henrikson NB, Feigelson HS, Hunter JE, Lee SS.  J Law Med Ethics. 2022;50(4):818-832.  PMID: 36883408  PMCID: PMC10009393

Literacy-adapted, electronic family history assessment for genetics referral in primary care: patient user insights from qualitative interviews

Mittendorf KF, Lewis HS, Duenas DM, Eubanks DJ, Gilmore MJ, Goddard KAB, Joseph G, Kauffman TL, Kraft SA, Lindberg NM, Reyes AA, Shuster E, Syngal S, Ukaegbu C, Zepp JM, Wilfond BS, Porter KM.  Hered Cancer Clin Pract. 2022 Jun 10;20(1):22. Epub 2022-06-10.  PMID: 35689290  PMCID: PMC9188215

Adaptation and early implementation of the PREdiction model for gene mutations (PREMM5™) for lynch syndrome risk assessment in a diverse population

Mittendorf KF, Ukaegbu C, Gilmore MJ, Lindberg NM, Kauffman TL, Eubanks DJ, Shuster E, Allen J, McMullen C, Feigelson HS, Anderson KP, Leo MC, Hunter JE, Sasaki SO, Zepp JM, Syngal S, Wilfond BS, Goddard KAB.  Fam Cancer. 2022 04;21(2):167-180. Epub 2021-03-23.  PMID: 33754278  PMCID: PMC8458476

Retrospective assessment of barriers and access to genetic services for hereditary cancer syndromes in an integrated health care delivery system

Muessig KR, Zepp JM, Keast E, Shuster EE, Reyes AA, Arnold B, Ingphakorn C, Gilmore MJ, Kauffman TL, Hunter JE, Knerr S, Feigelson HS, Goddard KAB.  Hered Cancer Clin Pract. 2022 Feb 10;20(1):7. Epub 2022-02-10.  PMID: 35144679  PMCID: PMC8832647

MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets

Qiu X, Boufaied N, Hallal T, Feit A, de Polo A, Luoma AM, Alahmadi W, Larocque J, Zadra G, Xie Y, Gu S, Tang Q, Zhang Y, Syamala S, Seo JH, Bell C, O'Connor E, Liu Y, Schaeffer EM, Jeffrey Karnes R, Weinmann S, Davicioni E, Morrissey C, Cejas P, Ellis L, Loda M, Wucherpfennig KW, Pomerantz MM, Spratt DE, Corey E, Freedman ML, Shirley Liu X, Brown M, Long HW, Labbé DP.  Nat Commun. 2022 May 13;13(1):2559. Epub 2022-05-13.  PMID: 35562350  PMCID: PMC9106722

Barriers to family history knowledge and family communication among LGBTQ+ individuals in the context of hereditary cancer risk assessment

Rolf BA, Schneider JL, Amendola LM, Davis JV, Mittendorf KF, Schmidt MA, Jarvik GP, Wilfond BS, Goddard KAB, Ezzell Hunter JJ Genet Couns. 2022 02;31(1):230-241. Epub 2021-07-23.  PMID: 34302314  PMCID: PMC8783924

Incidence of malignancies among patients with chronic hepatitis B in US health care organizations, 2006-2018

Spradling PR, Xing J, Zhong Y, Rupp LB, Moorman AC, Lu M, Teshale EH, Schmidt MA, Daida YG, Boscarino JA, Gordon SC.  J Infect Dis. 2022 Sep 13;226(5):896-900.  PMID: 35039863

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