Department of Translational and Applied Genomics (TAG)

Our Publications

2020

Participant reactions to a literacy-focused, web-based informed consent approach for a clinical genomic implementation study.

Kraft SA, Porter KM, Duenas DM, Guerra C, Joseph G, Lee SS, Shipman KJ, Allen JM, Eubanks D, Kauffman TL, Lindberg NM, Anderson K, Zepp JM, Gilmore MJ, Mittendorf KF, Shuster E, Muessig KR, Arnold B, Goddard KA, Wilfond BS.
AJOB Empirical Bioethics [in press].
doi: 10.1080/23294515.2020.1823907

A decision aid for additional findings in genomic sequencing: Development and pilot testing Corresponding.

Freed A,  Gruß I, McMullen C, Leo M, Kauffman T, Porter K, Muessig K, Eubanks D, Goddard K, Wilfond B.
Patient Education and Counseling [in press]

Discordant Patient and Clinician Perspectives on the Potential Value of Genetic Services in Safety.

McMullen C, Holup J, Davis J, Foley P, Jacob L, Cottrell E, Bui D, Wilfond B, Goddard K.
Johns Hopkins University Press [in press]
doi:10.1353/hpu.2020.0099

Lessons learned about harmonizing survey measures for the CSER consortium.

Goddard K, Angela F, Ackerman S, Berg J, Biesecker B, Danila M, East K, Hindorff L, Horowitz C, Hunter J, Galen J, Knight S, McGuire A.
Journal of Clinical and Translational Science [in press]
doi: 10.1017/cts.2020.41

The effect of multiple recruitment contacts on response rates and patterns of missing data in a survey of bladder cancer survivors 6 months after cystectomy. 

Bulkley JE, O'Keeffe-Rosetti M, Wendel CS, Davis JV, Danforth KN, Harrison TN, Kwan ML, Munneke J, Brooks N, Grant M, Leo MC, Banegas M, Weinmann S, McMullen CK. 
Qual Life Res 2020 Apr;29(4):879-889. 
doi: 10.1007/s11136-019-02379-3

Validation of a ductal carcinoma in situ biomarker profile for risk of recurrence after breast-conserving surgery with and without radiation therapy. 

Weinmann S, Leo M, Francisco M, Jenkins C, Barry T, Leesman G, Linke SP, Whitworth PW, Patel R, Pellicane J, Wärnberg F, Bremer T.
Clin Cancer Res 2020 Apr 27. [Epub ahead of print]
doi: 10.1158/1078-0432.CCR-19-1152 

Performance of clinicopathologic models in men with high risk localized prostate cancer: Impact of a 22-gene genomic classifier. 

Tosoian JJ, Birer SR, Jeffrey Karnes R, Zhang J, Davicioni E, Klein EE, Freedland SJ, Weinmann S, Trock BJ, Dess RT, Zhao SG, Jackson WC, Yamoah K, Pra AD, Mahal BA, Morgan TM, Mehra R, Kaffenberger S, Salami SS, Kane C, Pollack A, Den RB, Berlin A, Schaeffer EM, Nguyen PL, Feng FY, Spratt DE.
Prostate Cancer Prostatic Dis 2020 Mar 30. [Epub ahead of print] 
doi: 10.1038/s41391-020-0226-2

Loss of myoepithelial calponin-1 characterizes high-risk ductal carcinoma in situ cases, which are further stratified by T cell composition.

Mitchell E, Jindal S, Chan T, Narasimhan J, Sivagnanam S, Gray E, Chang YH, Weinmann S, Schedin P.  
Mol Carcinog 2020 Mar 5. [Epub ahead of print] 
doi: 10.1002/mc.23171

Human papillomavirus vaccine effectiveness against HPV infection: Evaluation of one, two, and three doses.

Markowitz LE, Naleway AL, Klein NP, Lewis RM, Crane B, Querec TD, Hsiao A, Aukes L, Timbol J, Weinmann S, Liu G, Steinau M, Unger ER.
J Infect Dis 2020 Mar 2;221(6):910-918.
doi: 10.1093/infdis/jiz555

Temporal trends in the incidence of anogenital warts: Impact of human papillomavirus vaccination. 

Naleway AL, Crane B, Smith N, Francisco M, Weinmann S, Markowitz LE.
Sex Transm Dis 2020 Mar;47(3):179-186.  
doi: 10.1097/olq.0000000000001103

Assessing the implications of positive genomic screening results.

Waltz M, Meagher KM, Henderson GE, Goddard KAB, Muessig K, Berg JS, Weck KE, Cadigan RJ.
Personalized Medicine 2020 Mar;17(2):101-109.
PMCID: PMC7147673
doi: 10.2217/pme-2019-0067

External validation of the EORTC and NCCN bladder cancer recurrence and progression risk calculators in a U.S. community-based health system. 

Leo MC, McMullen CK, O'Keeffe-Rosetti M, Weinmann S, Garg T, Nielsen ME. 
Urol Oncol. 2020 Feb;38(2):39.e21-39.e27.  
doi: 10.1016/j.urolonc.2019.10.003

Cost-effectiveness of risk-stratified colorectal cancer screening based on polygenic risk: Current status and future potential.

Naber SK, Kundu S, Kuntz KM, Dotson D, Williams MS, Zauber AG, Calonge N, Zallen DT, Ganiats TG, Whitlock EP, Webber EM, Goddard KAB, Henrikson NB, van Ballegooijen M, Janssens CJW, Lansdorp-Vogelaar I.
J NCI Cancer Spectrum 2020 Feb;4(1): pkz086.
doi: 10.1093/jncics/pkz086

Integrating stakeholder feedback in translational genomics research: an ethnographic analysis of a study protocol's evolution.

Kraft S, McMullen C, Lindberg N, Bui D, Shipman K, Anderson K, Joseph G, Duenas D, Porter K, Kauffman TL, Koomas A, Ransom CL, Jackson P, Goddard KAB, Wilfond BS, Lee SS.  
Genet Med. 2020 Feb 24. [Epub ahead of print]
doi: 10.1038/s41436-020-0763-z 
PMID: 32089547

Clustering of comorbid conditions among women who carry an FMR1 premutation.

Allen EG, Charen K, Hipp HS, Shubeck L, Amin A, He W, Hunter JE, Sherman SL.
Genet Med. 2020 Apr;22(4):758-766. Epub 2020 Jan 3.  
doi: 10.1038/s41436-019-0733-5
PMID: 31896764; PMCID: PMC7118023. 

Trivalent inactivated influenza vaccine (IIV3) during pregnancy and six-month infant development. 

Avalos LA, Ferber J, Zerbo O, Naleway AL, Bulkley J, Thompson M, Cragan J, Williams J, Odouli R, Kauffman TL, Ball S, Shifflett P, Li DK. 
Vaccine. 2020 Feb 28;38(10):2326-2332. 
doi: 10.1016/j.vaccine.2020.01.059

Integrating stakeholder feedback in translational genomics research: an ethnographic analysis of a study protocol's evolution.

Kraft S, McMullen C, Lindberg N, Bui D, Shipman K, Anderson K, Joseph G, Duenas D, Porter K, Kauffman TL, Koomas A, Ransom CL, Jackson P, Goddard KAB, Wilfond BS, Lee SS. 
Genet Med. 2020 Feb 24. [Epub ahead of print] 
doi: 10.1038/s41436-020-0763-z
PMID: 32089547 

The association between maternal occupation and down syndrome: A report from the national Down syndrome project.

Keen C, Hunter JE, Allen EG, Rocheleau C, Waters M, Sherman SL.
Int J Hyg Environ Health. 2020 Jan;223(1):207-213. Epub 2019 Sep 10.
doi: 10.1016/j.ijheh.2019.09.001
PMID: 31519426. 

Bicelles rich in both sphingolipids and cholesterol and their use in studies of membrane proteins.

Hutchison JM, Shih KC, Scheidt HA, Fantin SM, Parson KF, Pantelopulos GA, Harrington HR, Mittendorf KF, Qian S, Stein RA, Collier SE, Chambers MG, Katsaras J, Voehler MW, Ruotolo BT, Huster D, McFeeters RL, Straub JE, Nieh MP, Sanders CR.
Journal of the American Chemical Society. 2020. 142, 12715-12729
doi: 10.1021/jacs.0c04669

The My Cancer Genome clinical trial data model and trial curation workflow. 

Jain N, Mittendorf KF, Holt M, Lenoue-Newton M, Ian Maurer, Clinton Miller, Matthew Stachowiak, Michelle Botyrius, James Cole, Christine Micheel, and Mia Levy.
Journal of the American Medical Informatics Association. 2020. 27, 1057-1066 
doi: 10.1093/jamia/ocaa066

Publications by year

CHR-Northwest

Kaiser Permanente Research