Department of Translational and Applied Genomics (TAG)

Our Publications


Passive cigarette smoke exposure and other risk factors for invasive pneumococcal disease in children: A case-control study. 

Chun CS, Weinmann S, Riedlinger K, Mullooly JP.
Perm J 2015 Winter;19(1):38-43. [Epub 2014 Nov 24] PMCID: PMC4315375 

Reduction in Human Papillomavirus Vaccine type prevalence among young women screened for cervical cancer in an integrated US healthcare delivery system in 2007 and 2012-2013. 

Dunne EF, Naleway A, Smith N, Crane B, Weinmann S, Braxton J, Steinau M, Unger ER, Markowitz LE.
J Infect Dis 2015 Dec 15. [Epub 2015 Jun 29] 

Calculation of organ doses for a large number of patients undergoing CT examinations. 

Bahadori A, Miglioretti D, Kruger R, Flynn M, Weinmann S, Smith-Bindman R, Lee C.
AJR Am J Roentgenol 2015 Oct;205(4):827-33.
PMCID: PMC5384467 

Universal tumor screening for Lynch syndrome: Assessment of colorectal cancer patient perspectives on benefits and barriers. 

Hunter JE, Zepp J, Gilmore M, Davis J, Esterberg E, Muessig KR, Peterson SK, Syngal S, Acheson L, Wiesner G, Reiss J, Goddard KAB.
Journal of Clinical Oncology 2015 Sep 15;121(18):3281-9.
PMCID: PMC4560979  

Family history and the natural history of colorectal cancer: Systematic review.

Henrikson NB, Webber E, Goddard KAB, Scrol A, Piper M, Williams MS, Zallen DT, Calonge N, Ganiats TG, Janssens ACJW, Zauber A, Lansdorp-Vogelaar I, van Ballegooijen M, Whitlock E.
Genet Med 2015 Sep 2;17(9):702-712. PMCID: PMC4955831

Cervical cancer screening and follow-up in 4 geographically diverse US health care systems, 1998 through 2007. 

Weinmann S, Williams AE, Kamineni A, Buist DS, Masterson EE, Stout NK, Stark A, Ross TR, Owens CL, Field TS, Doubeni CA.
Cancer 2015 Sep 1;121(17):2976-83. [Epub 2015 May 18]
PMCID: PMC4545722 

It's complicated: Criteria for policy decisions for the clinical integration of genome scale sequencing for reproductive decision-making.

Wilfond B, Goddard KAB.
Molecular Genetics and Genomic Medicine 2015 Jul;3(4):239-242. PMCID: PMC4521960

ClinGen--the Clinical Genome Resource.

Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ, Ledbetter DH, Maglott DR, Martin CL, Nussbaum RL, Plon SE, Ramos EM, Sherry ST, Watson MS, ClinGen
N Engl J Med. 2015 Jun 4;372(23):2235-42. Epub 2015 May 27.
doi: 10.1056/NEJMsr1406261
PMID: 26014595; PMCID: PMC4474187. 

Development of an Algorithm to Classify Colonoscopy Indication from Coded Health Care Data. 

Adams KF, Johnson EA, Chubak J, Kamineni A, Doubeni CA, Buist DS, Williams AE, Weinmann S, Doria-Rose VP, Rutter CM.
EGEMS (Wash DC) 2015 May 18;3(1):1171.
PMCID: PMC4537082 

A Ten-Year Case-Control Study of Passive Smoke Exposure as a Risk Factor for Pertussis in Children. 

Schmidt MA, Kurosky SK, Mullooly JP, Chun C, Weinmann S.
Perm J 2015 Summer;19(3):59-63.
PMCID: PMC4500482 

Systematic review of the predictive effect of MSI status in colorectal cancer patients undergoing 5FU-based chemotherapy. 

Webber EM, Kauffman TL, O’Connor E, Goddard KAB.
BMC Cancer 2015 Mar 21;15:156. PMCID: PMC4376504  

Prevalence of colonoscopy before age 50.

Rutter CM, Greenlee RT, Johnson E, Stark A, Weinmann S, Kamineni A, Adams K, Doubeni CA.
Prev Med 2015 Mar;72:126-9. [Epub 2015 Jan 4] PMCID: PMC4482462

Leveraging biospecimen resources for discovery or validation of markers for early cancer detection.

Schully SD, Carrick DM, Mechanic LE, Srivastava S, Anderson GL, Baron JA, Berg C, Cullen J, Diamandis EP, Doria-Rose P, Goddard KAB, Hankinson SE, Kushi LH, Larson EB, McShane LM, Schilsky RL, Shak S, Skates SJ, Urban ND, Kramer BS, Khoury MJ, Ransohoff DF.
J Natl Cancer Inst 2015 Feb 16;107(4). PMCID: PMC4342676

Pregnancy after treatment for cervical cancer precursor lesions in a retrospective matched cohort. 

Naleway AL, Weinmann S, Krishnarajah G, Arondekar B, Fernandez J, Swamy G, Myers E.
PLoS One 2015 Feb 11;10(2):e0117525. PMCID: PMC4324989 

Evidence synthesis and guideline development in genomic medicine: current status and future prospects.

Scully SD, Lam TK, Dotson WD, Chang CQ, Aronson N, Birkeland ML, Brewster SJ, Boccia S, Buchanan AH, Calonge N, Calzone K, Djulbegovic B, Goddard KA, Klein RD, Klein TE, Lau J, Long R, Lyman GH, Morgan RL, Palmer CG, Relling MV, Rubinstein WS, Swen JJ, Terry SF, Williams MS, Khoury MJ.
Genet Med 2015 Jan;17(1):63-7. PMCID: PMC4272332

Follow-up and clinical significance of unsatisfactory liquid-based Papanicolaou tests.

Owens CL, Buist DS, Peterson D, Kamineni A, Weinmann S, Ross T, Williams AE, Stark A, Adams KF, Doubeni CA, Field TS.
Cancer Cytopathol 2015 Jan;123(1):59-65. [Epub 2014 Oct 23] PMCID: PMC4356524

Treatment patterns for ductal carcinoma in situ from 2000-2010 across six integrated health plans.

Feigelson HS, Carroll NM, Weinmann S, Haque R, Yu CL, Butler MG, Waitzfelder B, Wrenn MG, Capra A, McGlynn EA, Habel LA.
Springerplus 2015 Jan 17;4:24.
PMCID: PMC4300310

The Kaiser Permanente Biobank: A Multiregion Resource Linking Specimens and Electronic Medical Records for Broad Research in an Integrated Health Care Delivery System.

Feigelson HS, Croen LA, Goddard KA, Honda SA, Horberg MA, Koebnick C, Owen-Smith A, Rowell S, Schaefer C, Somkin CP, Emmons KM.
J Patient Cent Res Rev 2015;2:111-112.

CSER Genetic Counseling Working Group, Jarvik GP. Illustrative case studies in the return of exome and genome sequencing results.

Amendola LM, Lautenbach D, Scollon S, Bernhardt B, Biswas S, East K, Everett J, Gilmore MJ, Himes P, Raymond VM, Wynn J, Hart R. 
Per Med. 2015;12(3):283-295.

Conformational stability and pathogenic misfolding of the integral membrane protein PMP22. 

Schlebach JP, Narayan M, Alford C, Mittendorf KF, Carter BD, Li J, Sanders CR.
Journal of the American Chemical Society, 2015. 137, 8758-8768 

Publications by year


Kaiser Permanente Research